Antibiotic Resistance Gene Primers


LCPDb-ARG (Antibiotic Resistance Genes) is a subset of LCPDb - here we present primers extracted from published papers and analysed by our pipeline.
Original article available here


Genes conferring resistance to: Tetracycline


tetO

10 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 781
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 515
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 519
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 172
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 133
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 0.92
    • Prod. Length: 101
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 171
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 0.95
    • Prod. Length: 189
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 76
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 0.82
    • Prod. Length: 614
tetM

11 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.88
    • Prod. Length: 740
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.83
    • Prod. Length: 149
  • Primer Pair 3
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 597
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.92
    • Prod. Length: 158
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.12
    • Prod. Length: 186
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 172
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 0.64
    • Prod. Length: 197
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 198
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 657
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 0.76
    • Prod. Length: 406
  • Primer Pair 11
    • Specificiy: 1.0
    • Efficacy: 0.83
    • Prod. Length: 171
tet(30)

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 179
  • Primer Pair 2
    • Specificiy: 0.75
    • Efficacy: 1.0
    • Prod. Length: 210
tetG

11 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 133
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.78
    • Prod. Length: 82
  • Primer Pair 3
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 210
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.61
    • Prod. Length: 468
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.61
    • Prod. Length: 468
  • Primer Pair 6
    • Specificiy: 0.99
    • Efficacy: 0.72
    • Prod. Length: 140
  • Primer Pair 7
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 662
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 0.94
    • Prod. Length: 134
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 844
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 0.44
    • Prod. Length: 1141
  • Primer Pair 11
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 550
tetE

10 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 278
  • Primer Pair 2
    • Specificiy: 0.75
    • Efficacy: 0.27
    • Prod. Length: 1196
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 153
  • Primer Pair 4
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 575
  • Primer Pair 5
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 549
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 0.87
    • Prod. Length: 744
  • Primer Pair 7
    • Specificiy: 0.96
    • Efficacy: 0.93
    • Prod. Length: 262
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 0.27
    • Prod. Length: 1179
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 199
  • Primer Pair 10
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 544
tetC

13 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 418
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.89
    • Prod. Length: 335
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.89
    • Prod. Length: 157
  • Primer Pair 4
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 525
  • Primer Pair 5
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 95
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 0.89
    • Prod. Length: 970
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 207
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 207
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 0.96
    • Prod. Length: 1014
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 897
  • Primer Pair 11
    • Specificiy: 1.0
    • Efficacy: 0.96
    • Prod. Length: 505
  • Primer Pair 12
    • Specificiy: 0.98
    • Efficacy: 0.96
    • Prod. Length: 570
  • Primer Pair 13
    • Specificiy: 0.99
    • Efficacy: 0.96
    • Prod. Length: 1138
tetD

11 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 787
  • Primer Pair 2
    • Specificiy: 0.97
    • Efficacy: 0.83
    • Prod. Length: 1104
  • Primer Pair 3
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 76
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 346
  • Primer Pair 5
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1567
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 855
  • Primer Pair 7
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 468
  • Primer Pair 8
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 787
  • Primer Pair 9
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 435
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 0.92
    • Prod. Length: 187
  • Primer Pair 11
    • Specificiy: 0.96
    • Efficacy: 0.83
    • Prod. Length: 1121
otrA

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.2
    • Prod. Length: 788
  • Primer Pair 2
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 212
tetB(P)

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 143
  • Primer Pair 2
    • Specificiy: 0.92
    • Efficacy: 0.4
    • Prod. Length: 169
tetS

5 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 176
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 172
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 660
  • Primer Pair 4
    • Specificiy: 0.98
    • Efficacy: 0.93
    • Prod. Length: 667
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 169
tetT

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.71
    • Prod. Length: 197
  • Primer Pair 2
    • Specificiy: 0.71
    • Efficacy: 0.43
    • Prod. Length: 169
tetB

15 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 391
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 206
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 659
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.74
    • Prod. Length: 416
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 773
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 192
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 136
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 151
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 0.97
    • Prod. Length: 414
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 634
  • Primer Pair 11
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 929
  • Primer Pair 12
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1572
  • Primer Pair 13
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 571
  • Primer Pair 14
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 571
  • Primer Pair 15
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 205
tetQ

6 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.82
    • Prod. Length: 169
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.82
    • Prod. Length: 169
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.82
    • Prod. Length: 60
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.8
    • Prod. Length: 153
  • Primer Pair 5
    • Specificiy: 0.99
    • Efficacy: 0.93
    • Prod. Length: 69
  • Primer Pair 6
    • Specificiy: 0.41
    • Efficacy: 0.14
    • Prod. Length: 904
tetW

5 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 1846
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.86
    • Prod. Length: 584
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.49
    • Prod. Length: 168
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.88
    • Prod. Length: 172
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.97
    • Prod. Length: 66
tet(A)P

3 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.88
    • Efficacy: 1.0
    • Prod. Length: 171
  • Primer Pair 2
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 290
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.89
    • Prod. Length: 676
tetX

7 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 195
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.69
    • Prod. Length: 278
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.77
    • Prod. Length: 131
  • Primer Pair 4
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 150
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 243
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 0.87
    • Prod. Length: 186
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 0.69
    • Prod. Length: 468
tetL

11 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.5
    • Prod. Length: 696
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.53
    • Prod. Length: 1077
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.52
    • Prod. Length: 222
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.55
    • Prod. Length: 229
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.32
    • Prod. Length: 101
  • Primer Pair 6
    • Specificiy: 0.72
    • Efficacy: 1.0
    • Prod. Length: 215
  • Primer Pair 7
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 631
  • Primer Pair 8
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1510
  • Primer Pair 9
    • Specificiy: 0.93
    • Efficacy: 1.0
    • Prod. Length: 102
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 0.5
    • Prod. Length: 488
  • Primer Pair 11
    • Specificiy: 1.0
    • Efficacy: 0.55
    • Prod. Length: 267
tetK

8 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.97
    • Efficacy: 1.0
    • Prod. Length: 360
  • Primer Pair 2
    • Specificiy: 0.97
    • Efficacy: 1.0
    • Prod. Length: 361
  • Primer Pair 3
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 460
  • Primer Pair 4
    • Specificiy: 0.58
    • Efficacy: 1.0
    • Prod. Length: 1159
  • Primer Pair 5
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 348
  • Primer Pair 6
    • Specificiy: 0.96
    • Efficacy: 1.0
    • Prod. Length: 162
  • Primer Pair 7
    • Specificiy: 0.98
    • Efficacy: 1.0
    • Prod. Length: 718
  • Primer Pair 8
    • Specificiy: 0.98
    • Efficacy: 1.0
    • Prod. Length: 169
tet(39)

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.83
    • Prod. Length: 154
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 701
tetZ

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 142
  • Primer Pair 2
    • Specificiy: 0.4
    • Efficacy: 1.0
    • Prod. Length: 753
  • Primer Pair 3
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 180
  • Primer Pair 4
    • Specificiy: 0.1
    • Efficacy: 1.0
    • Prod. Length: 204
otrB

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.42
    • Efficacy: 1.0
    • Prod. Length: 947
tetJ

3 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 300
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.94
    • Prod. Length: 194
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.06
    • Prod. Length: 184
tetY

3 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.86
    • Efficacy: 1.0
    • Prod. Length: 1031
  • Primer Pair 2
    • Specificiy: 0.75
    • Efficacy: 1.0
    • Prod. Length: 146
  • Primer Pair 3
    • Specificiy: 0.92
    • Efficacy: 1.0
    • Prod. Length: 181
tetA

10 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1086
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.93
    • Prod. Length: 210
  • Primer Pair 3
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 83
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 888
  • Primer Pair 5
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 176
  • Primer Pair 6
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 187
  • Primer Pair 7
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 198
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 0.72
    • Prod. Length: 200
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 0.97
    • Prod. Length: 937
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 0.97
    • Prod. Length: 950
tet(33)

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 198
  • Primer Pair 2
    • Specificiy: 0.88
    • Efficacy: 1.0
    • Prod. Length: 784
tet(31)

3 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 168
  • Primer Pair 2
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 652
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 743
tet(34)

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.12
    • Efficacy: 1.0
    • Prod. Length: 212
  • Primer Pair 2
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 729
tet(37)

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 196
tet(36)

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 192
tet(35)

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 190
tetV

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.9
    • Efficacy: 0.75
    • Prod. Length: 185
tet(38)

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 159
tet(32)

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 277
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.4
    • Prod. Length: 149
tetH

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 164
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 185
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 407
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.94
    • Prod. Length: 1007