Antibiotic Resistance Gene Primers


LCPDb-ARG (Antibiotic Resistance Genes) is a subset of LCPDb - here we present primers extracted from published papers and analysed by our pipeline.
Original article available here

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# Gene Name Antibiotic Class Primer Pair Count
1 tetO Tetracycline 10
2 tetM Tetracycline 11
3 sul1 Sulfonamides 11
4 tet(30) Tetracycline 2
5 sul3 Sulfonamides 8
6 tetG Tetracycline 11
7 blaPSE Beta-lactams 1
8 tetE Tetracycline 10
9 blaPER Beta-lactams 8
10 tetC Tetracycline 13
11 blaSHV Beta-lactams 14
12 tetD Tetracycline 11
13 blaCTX-M(1) Beta-lactams 5
14 otrA Tetracycline 2
15 blaCTX-M(2) Beta-lactams 5
16 tetB(P) Tetracycline 2
17 blaOXA-10 Beta-lactams 4
18 tetS Tetracycline 5
19 blaADC Beta-lactams 1
20 tetT Tetracycline 2
21 blaCTX-M Beta-lactams 10
22 blaTEM Beta-lactams 19
23 blaOXA-1 Beta-lactams 5
24 blaIMP Beta-lactams 8
25 tetB Tetracycline 15
26 tetQ Tetracycline 6
27 tetW Tetracycline 5
28 tet(A)P Tetracycline 3
29 ermB Macrolides-streptogarmins-lincosamides 18
30 tetX Tetracycline 7
31 ermT Macrolides-streptogarmins-lincosamides 2
32 tetL Tetracycline 11
33 vanA Glycopeptides 10
34 tetK Tetracycline 8
35 sul2 Sulfonamides 14
36 strA Aminoglycosides 4
37 tet(39) Tetracycline 2
38 tetZ Tetracycline 4
39 otrB Tetracycline 1
40 tetJ Tetracycline 3
41 aadA10 Aminoglycosides 1
42 tetY Tetracycline 3
43 aadA4 Aminoglycosides 1
44 ermA Macrolides-streptogarmins-lincosamides 12
45 aac(6')-Im Aminoglycosides 1
46 AmpC Beta-lactams 4
47 aadA7 Aminoglycosides 1
48 tetA Tetracycline 10
49 aadA12 Aminoglycosides 1
50 vanG Glycopeptides 1
51 aadA9 Aminoglycosides 1
52 strB Aminoglycosides 3
53 vanC Glycopeptides 7
54 vanB Glycopeptides 9
55 fexA Amphenicols 1
56 vanD Glycopeptides 2
57 catP Amphenicols 1
58 vanE Glycopeptides 1
59 catTC Amphenicols 1
60 tet(33) Tetracycline 2
61 catB9 Amphenicols 1
62 tet(31) Tetracycline 3
63 tet(34) Tetracycline 2
64 catA2 Amphenicols 1
65 floR Amphenicols 2
66 catA Amphenicols 1
67 cmxA Amphenicols 1
68 catB8 Amphenicols 1
69 cat Amphenicols 4
70 catB2 Amphenicols 1
71 catB7 Amphenicols 1
72 catA3 Amphenicols 1
73 cmlB Amphenicols 1
74 cmlA1 Amphenicols 1
75 mecA Beta-lactams 8
76 ermF Macrolides-streptogarmins-lincosamides 10
77 mphA Macrolides-streptogarmins-lincosamides 4
78 mphB Macrolides-streptogarmins-lincosamides 2
79 mphC Macrolides-streptogarmins-lincosamides 2
80 mefA Macrolides-streptogarmins-lincosamides 3
81 msrD Macrolides-streptogarmins-lincosamides 1
82 vgbA Macrolides-streptogarmins-lincosamides 1
83 ereA2 Macrolides-streptogarmins-lincosamides 1
84 vgbB Macrolides-streptogarmins-lincosamides 1
85 ermD Macrolides-streptogarmins-lincosamides 2
86 ereB Macrolides-streptogarmins-lincosamides 1
87 msrA Macrolides-streptogarmins-lincosamides 3
88 qacH Multidrug resistance pumps 1
89 qacG Multidrug resistance pumps 2
90 qacE Multidrug resistance pumps 1
91 qacF Multidrug resistance pumps 2
92 qacB Multidrug resistance pumps 2
93 qnrB Quinolones 10
94 qnrA Quinolones 6
95 dfrB Sulfonamides 5
96 dfrA6 Sulfonamides 1
97 dfrD Sulfonamides 2
98 dfrA5 Sulfonamides 1
99 dfrA16 Sulfonamides 1
100 dfrA12 Sulfonamides 1
101 dfrA17 Sulfonamides 1
102 tet(37) Tetracycline 1
103 blaCMY Beta-lactams 4
104 tet(36) Tetracycline 1
105 blaOXA-48 Beta-lactams 3
106 tet(35) Tetracycline 1
107 blaOXA-24 Beta-lactams 4
108 tetV Tetracycline 1
109 blaSIM Beta-lactams 4
110 tet(38) Tetracycline 1
111 blaKPC Beta-lactams 5
112 tet(32) Tetracycline 2
113 blaCTX-M15 Beta-lactams 1
114 dfrA Sulfonamides 13
115 blaCTX-M(8) Beta-lactams 2
116 blaVEB Beta-lactams 10
117 blaCTX-M(25 Beta-lactams 1
118 blaOXA-23 Beta-lactams 4
119 blaOXA-4 Beta-lactams 1
120 blaOXA-40 Beta-lactams 1
121 blaSME Beta-lactams 1
122 blaOXA-51 Beta-lactams 4
123 ereA Macrolides-streptogarmins-lincosamides 1
124 blaOXA-58 Beta-lactams 7
125 blaGIM Beta-lactams 2
126 blaCTX-M(9) Beta-lactams 4
127 blaSPM Beta-lactams 1
128 tetH Tetracycline 4
129 linA Macrolides-streptogarmins-lincosamides 1
130 oqxB Multidrug resistance pumps 3
131 dfrG Sulfonamides 1
132 oqxA Multidrug resistance pumps 2
133 dfrK Sulfonamides 1
134 qepA Quinolones 3
135 mecC Beta-lactams 1
136 ermG Macrolides-streptogarmins-lincosamides 2
137 aadD Aminoglycosides 1
138 blaGES Beta-lactams 5
139 fosB Amphenicols 1
140 blaVIM Beta-lactams 8
141 aadA2 Aminoglycosides 1
142 blaNDM-1 Beta-lactams 7
143 blaOXA-20 Beta-lactams 1
144 vanC-2 Glycopeptides 2
145 erm33 Macrolides-streptogarmins-lincosamides 1
146 vanC-3 Glycopeptides 1
147 ermC Macrolides-streptogarmins-lincosamides 10
148 vatC Macrolides-streptogarmins-lincosamides 1
149 qacC Multidrug resistance pumps 1
150 vatA Macrolides-streptogarmins-lincosamides 1
151 qacA Multidrug resistance pumps 1
152 vatB Macrolides-streptogarmins-lincosamides 1
153 aac(6')-Ib Aminoglycosides 1
154 mcr-1 Polymyxins 86
155 mcr-12 Polymyxins 8
156 mcr-2 Polymyxins 22
157 mcr-3 Polymyxins 19
158 mcr-4 Polymyxins 13
159 mcr-5 Polymyxins 13
160 mcr-6 Polymyxins 3
161 mcr-7 Polymyxins 4
162 mcr-8 Polymyxins 5
163 mcr-9 Polymyxins 3
164 ermX Macrolides-streptogarmins-lincosamides 3
165 blaOXA-2 Beta-lactams 2
166 qnrS Quinolones 9
167 qnrD Quinolones 4
168 qnrVC Quinolones 1
169 qnrC Quinolones 3
170 blaDHA Beta-lactams 4
171 blaOXA-30 Beta-lactams 1
172 ermE Macrolides-streptogarmins-lincosamides 1
173 blaOXA-143 Beta-lactams 1