Antibiotic Resistance Gene Primers


LCPDb-ARG (Antibiotic Resistance Genes) is a subset of LCPDb - here we present primers extracted from published papers and analysed by our pipeline.
Original article available here


Genes conferring resistance to: Beta-lactams


blaPSE

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.82
    • Prod. Length: 438
blaPER

8 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.86
    • Prod. Length: 520
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.71
    • Prod. Length: 927
  • Primer Pair 3
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 953
  • Primer Pair 4
    • Specificiy: 0.96
    • Efficacy: 0.71
    • Prod. Length: 925
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.86
    • Prod. Length: 340
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 0.05
    • Prod. Length: 927
  • Primer Pair 7
    • Specificiy: 0.98
    • Efficacy: 0.71
    • Prod. Length: 926
  • Primer Pair 8
    • Specificiy: 0.96
    • Efficacy: 0.71
    • Prod. Length: 934
blaSHV

14 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 267
  • Primer Pair 2
    • Specificiy: 0.95
    • Efficacy: 0.97
    • Prod. Length: 471
  • Primer Pair 3
    • Specificiy: 0.94
    • Efficacy: 1.0
    • Prod. Length: 119
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 753
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.96
    • Prod. Length: 795
  • Primer Pair 6
    • Specificiy: 0.98
    • Efficacy: -1.0
    • Prod. Length: 827
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 231
  • Primer Pair 8
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1016
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 0.83
    • Prod. Length: 768
  • Primer Pair 10
    • Specificiy: 0.97
    • Efficacy: 0.97
    • Prod. Length: 290
  • Primer Pair 11
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 303
  • Primer Pair 12
    • Specificiy: 0.93
    • Efficacy: 0.98
    • Prod. Length: 861
  • Primer Pair 13
    • Specificiy: 0.95
    • Efficacy: 0.89
    • Prod. Length: 867
  • Primer Pair 14
    • Specificiy: 0.97
    • Efficacy: 0.89
    • Prod. Length: 868
blaCTX-M(1)

5 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.55
    • Prod. Length: 688
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 909
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.52
    • Prod. Length: 499
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.54
    • Prod. Length: 64
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.12
    • Prod. Length: 864
blaCTX-M(2)

5 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.97
    • Efficacy: 0.4
    • Prod. Length: 351
  • Primer Pair 2
    • Specificiy: 0.98
    • Efficacy: 0.17
    • Prod. Length: 404
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.09
    • Prod. Length: 866
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.08
    • Prod. Length: 876
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.12
    • Prod. Length: 864
blaOXA-10

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.04
    • Prod. Length: 191
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.04
    • Prod. Length: 277
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.04
    • Prod. Length: 760
  • Primer Pair 4
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 699
blaADC

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.93
    • Efficacy: 0.61
    • Prod. Length: 1152
blaCTX-M

10 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.98
    • Efficacy: 0.67
    • Prod. Length: 590
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.77
    • Prod. Length: 101
  • Primer Pair 3
    • Specificiy: 0.95
    • Efficacy: 0.92
    • Prod. Length: 544
  • Primer Pair 4
    • Specificiy: 0.98
    • Efficacy: 0.13
    • Prod. Length: 593
  • Primer Pair 5
    • Specificiy: 0.96
    • Efficacy: 0.97
    • Prod. Length: 585
  • Primer Pair 6
    • Specificiy: 0.96
    • Efficacy: 0.92
    • Prod. Length: 538
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 968
  • Primer Pair 8
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 593
  • Primer Pair 9
    • Specificiy: 0.97
    • Efficacy: 0.67
    • Prod. Length: 542
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 0.08
    • Prod. Length: 876
blaTEM

19 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.4
    • Prod. Length: 867
  • Primer Pair 2
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 3185
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 752
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 844
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 861
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 848
  • Primer Pair 7
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1074
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 0.87
    • Prod. Length: 425
  • Primer Pair 9
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1109
  • Primer Pair 10
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1150
  • Primer Pair 11
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1080
  • Primer Pair 12
    • Specificiy: 1.0
    • Efficacy: 0.42
    • Prod. Length: 862
  • Primer Pair 13
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 445
  • Primer Pair 14
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 861
  • Primer Pair 15
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 310
  • Primer Pair 16
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 800
  • Primer Pair 17
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 716
  • Primer Pair 18
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 167
  • Primer Pair 19
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 867
blaOXA-1

5 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.04
    • Prod. Length: 199
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.03
    • Prod. Length: 755
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.04
    • Prod. Length: 564
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.02
    • Prod. Length: 246
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.03
    • Prod. Length: 813
blaIMP

8 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.95
    • Prod. Length: 232
  • Primer Pair 2
    • Specificiy: 0.98
    • Efficacy: 0.93
    • Prod. Length: 432
  • Primer Pair 3
    • Specificiy: 0.99
    • Efficacy: 0.97
    • Prod. Length: 188
  • Primer Pair 4
    • Specificiy: 0.99
    • Efficacy: 0.88
    • Prod. Length: 139
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.76
    • Prod. Length: 578
  • Primer Pair 6
    • Specificiy: 0.97
    • Efficacy: 0.33
    • Prod. Length: 740
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 0.82
    • Prod. Length: 488
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 737
AmpC

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 191
  • Primer Pair 2
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 189
  • Primer Pair 3
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 97
  • Primer Pair 4
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 567
mecA

8 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.98
    • Efficacy: 0.99
    • Prod. Length: 294
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 499
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 583
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.95
    • Prod. Length: 307
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 147
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 310
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 163
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 0.95
    • Prod. Length: 185
blaCMY

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 224
  • Primer Pair 2
    • Specificiy: 0.99
    • Efficacy: 0.95
    • Prod. Length: 868
  • Primer Pair 3
    • Specificiy: 0.98
    • Efficacy: 0.92
    • Prod. Length: 462
  • Primer Pair 4
    • Specificiy: 0.99
    • Efficacy: -1.0
    • Prod. Length: 1222
blaOXA-48

3 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 800
  • Primer Pair 2
    • Specificiy: 0.99
    • Efficacy: 0.12
    • Prod. Length: 438
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 876
blaOXA-24

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 246
  • Primer Pair 2
    • Specificiy: 0.58
    • Efficacy: 0.01
    • Prod. Length: 828
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.02
    • Prod. Length: 249
  • Primer Pair 4
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 599
blaSIM

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 570
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 571
  • Primer Pair 3
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 741
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 570
blaKPC

5 primer pair(s) available

  • Primer Pair 1
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 213
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 237
  • Primer Pair 3
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1011
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 538
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 798
blaCTX-M15

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 925
blaCTX-M(8)

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.99
    • Efficacy: 0.05
    • Prod. Length: 307
  • Primer Pair 2
    • Specificiy: 0.03
    • Efficacy: 0.02
    • Prod. Length: 666
blaVEB

10 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 648
  • Primer Pair 2
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 780
  • Primer Pair 3
    • Specificiy: 0.97
    • Efficacy: 0.74
    • Prod. Length: 900
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 585
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 643
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 689
  • Primer Pair 7
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1071
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 925
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 542
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 841
blaCTX-M(25

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.03
    • Prod. Length: 327
blaOXA-23

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 501
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.07
    • Prod. Length: 606
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.07
    • Prod. Length: 606
  • Primer Pair 4
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1057
blaOXA-4

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 216
blaOXA-40

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.01
    • Prod. Length: 825
blaSME

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.42
    • Efficacy: 0.86
    • Prod. Length: 831
blaOXA-51

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.2
    • Prod. Length: 353
  • Primer Pair 2
    • Specificiy: 0.98
    • Efficacy: 0.22
    • Prod. Length: 382
  • Primer Pair 3
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 880
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.2
    • Prod. Length: 641
blaOXA-58

7 primer pair(s) available

  • Primer Pair 1
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 246
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.02
    • Prod. Length: 593
  • Primer Pair 3
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 599
  • Primer Pair 4
    • Specificiy: 0.96
    • Efficacy: 0.01
    • Prod. Length: 842
  • Primer Pair 5
    • Specificiy: 0.96
    • Efficacy: 0.01
    • Prod. Length: 843
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 0.02
    • Prod. Length: 599
  • Primer Pair 7
    • Specificiy: 0.99
    • Efficacy: 0.02
    • Prod. Length: 453
blaGIM

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 729
  • Primer Pair 2
    • Specificiy: 0.97
    • Efficacy: 1.0
    • Prod. Length: 477
blaCTX-M(9)

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.25
    • Prod. Length: 474
  • Primer Pair 2
    • Specificiy: 0.88
    • Efficacy: 0.25
    • Prod. Length: 561
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.25
    • Prod. Length: 871
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.29
    • Prod. Length: 68
blaSPM

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 271
mecC

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 138
blaGES

5 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.92
    • Prod. Length: 287
  • Primer Pair 2
    • Specificiy: 0.99
    • Efficacy: 0.8
    • Prod. Length: 399
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.79
    • Prod. Length: 323
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.76
    • Prod. Length: 846
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 0.76
    • Prod. Length: 863
blaVIM

8 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 189
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 390
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 500
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.94
    • Prod. Length: 390
  • Primer Pair 5
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 748
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 865
  • Primer Pair 7
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 920
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 0.86
    • Prod. Length: 780
blaNDM-1

7 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 214
  • Primer Pair 2
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 984
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 476
  • Primer Pair 4
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 621
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 515
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 813
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 497
blaOXA-20

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 766
blaOXA-2

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.03
    • Prod. Length: 177
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.03
    • Prod. Length: 700
blaDHA

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 283
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 144
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.92
    • Prod. Length: 997
  • Primer Pair 4
    • Specificiy: 0.94
    • Efficacy: -1.0
    • Prod. Length: 970
blaOXA-30

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.03
    • Prod. Length: 814
blaOXA-143

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: -1.0
    • Prod. Length: 149