Antibiotic Resistance Gene Primers


LCPDb-ARG (Antibiotic Resistance Genes) is a subset of LCPDb - here we present primers extracted from published papers and analysed by our pipeline.
Original article available here


Genes conferring resistance to: Macrolides-streptogarmins-lincosamides


ermB

18 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 745
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 573
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 193
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.95
    • Prod. Length: 179
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 425
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 141
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 543
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 86
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 138
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 364
  • Primer Pair 11
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 200
  • Primer Pair 12
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 139
  • Primer Pair 13
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 119
  • Primer Pair 14
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 142
  • Primer Pair 15
    • Specificiy: 1.0
    • Efficacy: 0.99
    • Prod. Length: 572
  • Primer Pair 16
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 190
  • Primer Pair 17
    • Specificiy: 0.98
    • Efficacy: 0.06
    • Prod. Length: 639
  • Primer Pair 18
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 189
ermT

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.5
    • Efficacy: 0.07
    • Prod. Length: 480
  • Primer Pair 2
    • Specificiy: 0.97
    • Efficacy: 0.93
    • Prod. Length: 395
ermA

12 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.91
    • Efficacy: 0.87
    • Prod. Length: 645
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.66
    • Prod. Length: 139
  • Primer Pair 3
    • Specificiy: 0.74
    • Efficacy: 0.87
    • Prod. Length: 530
  • Primer Pair 4
    • Specificiy: 0.82
    • Efficacy: 0.84
    • Prod. Length: 421
  • Primer Pair 5
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 139
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 0.64
    • Prod. Length: 200
  • Primer Pair 7
    • Specificiy: 0.06
    • Efficacy: 0.13
    • Prod. Length: 190
  • Primer Pair 8
    • Specificiy: 0.98
    • Efficacy: 1.0
    • Prod. Length: 537
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 0.66
    • Prod. Length: 168
  • Primer Pair 10
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 185
  • Primer Pair 11
    • Specificiy: 1.0
    • Efficacy: 0.13
    • Prod. Length: 190
  • Primer Pair 12
    • Specificiy: 1.0
    • Efficacy: 0.77
    • Prod. Length: 190
ermF

10 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.99
    • Efficacy: 0.92
    • Prod. Length: 178
  • Primer Pair 2
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 200
  • Primer Pair 3
    • Specificiy: 0.98
    • Efficacy: 0.92
    • Prod. Length: 274
  • Primer Pair 4
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 309
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 466
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 185
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 182
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 460
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 0.92
    • Prod. Length: 424
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 0.92
    • Prod. Length: 323
mphA

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 403
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 60
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 153
  • Primer Pair 4
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 200
mphB

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 199
  • Primer Pair 2
    • Specificiy: 0.92
    • Efficacy: 0.06
    • Prod. Length: 200
mphC

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.88
    • Prod. Length: 722
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.5
    • Prod. Length: 200
mefA

3 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 348
  • Primer Pair 2
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 179
  • Primer Pair 3
    • Specificiy: 0.99
    • Efficacy: 0.97
    • Prod. Length: 199
msrD

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 198
vgbA

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 188
ereA2

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.27
    • Prod. Length: 177
vgbB

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.22
    • Efficacy: 1.0
    • Prod. Length: 177
ermD

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 520
  • Primer Pair 2
    • Specificiy: 0.94
    • Efficacy: 1.0
    • Prod. Length: 167
ereB

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 158
msrA

3 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.26
    • Prod. Length: 940
  • Primer Pair 2
    • Specificiy: 0.98
    • Efficacy: 0.49
    • Prod. Length: 163
  • Primer Pair 3
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 158
ereA

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 537
linA

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 323
ermG

2 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.73
    • Efficacy: 1.0
    • Prod. Length: 406
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 177
erm33

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 239
ermC

10 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.7
    • Efficacy: 1.0
    • Prod. Length: 642
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.72
    • Prod. Length: 190
  • Primer Pair 3
    • Specificiy: 0.99
    • Efficacy: 0.97
    • Prod. Length: 299
  • Primer Pair 4
    • Specificiy: 0.97
    • Efficacy: 1.0
    • Prod. Length: 571
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 84
  • Primer Pair 6
    • Specificiy: 0.98
    • Efficacy: 1.0
    • Prod. Length: 564
  • Primer Pair 7
    • Specificiy: -1.0
    • Efficacy: 0.0
    • Prod. Length: 185
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 292
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 293
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 295
vatC

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 467
vatA

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 268
vatB

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.67
    • Efficacy: 1.0
    • Prod. Length: 136
ermX

3 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.97
    • Prod. Length: 219
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.57
    • Prod. Length: 620
  • Primer Pair 3
    • Specificiy: 0.95
    • Efficacy: 1.0
    • Prod. Length: 488
ermE

1 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.5
    • Prod. Length: 325