Antibiotic Resistance Gene Primers


LCPDb-ARG (Antibiotic Resistance Genes) is a subset of LCPDb - here we present primers extracted from published papers and analysed by our pipeline.
Original article available here


Genes conferring resistance to: Polymyxins


mcr-1

86 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.66
    • Prod. Length: 1626
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.76
    • Prod. Length: 554
  • Primer Pair 3
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1257
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 342
  • Primer Pair 5
    • Specificiy: 0.99
    • Efficacy: 0.76
    • Prod. Length: 913
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 521
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 141
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 0.68
    • Prod. Length: 1626
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 0.71
    • Prod. Length: 1626
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 164
  • Primer Pair 11
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 271
  • Primer Pair 12
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 116
  • Primer Pair 13
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 147
  • Primer Pair 14
    • Specificiy: 1.0
    • Efficacy: 0.76
    • Prod. Length: 1497
  • Primer Pair 15
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 114
  • Primer Pair 16
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 183
  • Primer Pair 17
    • Specificiy: 1.0
    • Efficacy: 0.93
    • Prod. Length: 1502
  • Primer Pair 18
    • Specificiy: 1.0
    • Efficacy: 0.76
    • Prod. Length: 145
  • Primer Pair 19
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 213
  • Primer Pair 20
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 1257
  • Primer Pair 21
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 1257
  • Primer Pair 22
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 306
  • Primer Pair 23
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 100
  • Primer Pair 24
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 413
  • Primer Pair 25
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 200
  • Primer Pair 26
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 396
  • Primer Pair 27
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 109
  • Primer Pair 28
    • Specificiy: 0.98
    • Efficacy: 1.0
    • Prod. Length: 650
  • Primer Pair 29
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 391
  • Primer Pair 30
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 114
  • Primer Pair 31
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1856
  • Primer Pair 32
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 956
  • Primer Pair 33
    • Specificiy: 1.0
    • Efficacy: 0.71
    • Prod. Length: 1626
  • Primer Pair 34
    • Specificiy: 1.0
    • Efficacy: 0.71
    • Prod. Length: 1626
  • Primer Pair 35
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 84
  • Primer Pair 36
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 120
  • Primer Pair 37
    • Specificiy: 1.0
    • Efficacy: 0.0
    • Prod. Length: 1637
  • Primer Pair 38
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 97
  • Primer Pair 39
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 97
  • Primer Pair 40
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 102
  • Primer Pair 41
    • Specificiy: 1.0
    • Efficacy: 0.68
    • Prod. Length: 1646
  • Primer Pair 42
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 213
  • Primer Pair 43
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 127
  • Primer Pair 44
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 138
  • Primer Pair 45
    • Specificiy: 1.0
    • Efficacy: 0.8
    • Prod. Length: 338
  • Primer Pair 46
    • Specificiy: 0.99
    • Efficacy: 0.71
    • Prod. Length: 1607
  • Primer Pair 47
    • Specificiy: 1.0
    • Efficacy: 0.95
    • Prod. Length: 320
  • Primer Pair 48
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 582
  • Primer Pair 49
    • Specificiy: 1.0
    • Efficacy: 0.8
    • Prod. Length: 398
  • Primer Pair 50
    • Specificiy: 0.99
    • Efficacy: 0.76
    • Prod. Length: 1626
  • Primer Pair 51
    • Specificiy: 1.0
    • Efficacy: 0.88
    • Prod. Length: 308
  • Primer Pair 52
    • Specificiy: 1.0
    • Efficacy: 0.78
    • Prod. Length: 460
  • Primer Pair 53
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 408
  • Primer Pair 54
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 203
  • Primer Pair 55
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 155
  • Primer Pair 56
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 115
  • Primer Pair 57
    • Specificiy: 1.0
    • Efficacy: 0.76
    • Prod. Length: 1586
  • Primer Pair 58
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 1126
  • Primer Pair 59
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 178
  • Primer Pair 60
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 639
  • Primer Pair 61
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 224
  • Primer Pair 62
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 59
  • Primer Pair 63
    • Specificiy: 0.99
    • Efficacy: 0.68
    • Prod. Length: 1610
  • Primer Pair 64
    • Specificiy: 1.0
    • Efficacy: 0.76
    • Prod. Length: 602
  • Primer Pair 65
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 784
  • Primer Pair 66
    • Specificiy: 1.0
    • Efficacy: 0.0
    • Prod. Length: 1672
  • Primer Pair 67
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 107
  • Primer Pair 68
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 953
  • Primer Pair 69
    • Specificiy: 1.0
    • Efficacy: 0.88
    • Prod. Length: 841
  • Primer Pair 70
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 2152
  • Primer Pair 71
    • Specificiy: 1.0
    • Efficacy: 0.88
    • Prod. Length: 915
  • Primer Pair 72
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 205
  • Primer Pair 73
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 115
  • Primer Pair 74
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 1139
  • Primer Pair 75
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 502
  • Primer Pair 76
    • Specificiy: 1.0
    • Efficacy: 0.95
    • Prod. Length: 217
  • Primer Pair 77
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 102
  • Primer Pair 78
    • Specificiy: 0.98
    • Efficacy: 0.76
    • Prod. Length: 749
  • Primer Pair 79
    • Specificiy: 0.99
    • Efficacy: 0.76
    • Prod. Length: 382
  • Primer Pair 80
    • Specificiy: 0.98
    • Efficacy: 0.76
    • Prod. Length: 1575
  • Primer Pair 81
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1914
  • Primer Pair 82
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 2165
  • Primer Pair 83
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1548
  • Primer Pair 84
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 82
  • Primer Pair 85
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1626
  • Primer Pair 86
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 115
mcr-12

8 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1617
  • Primer Pair 2
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 98
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 143
  • Primer Pair 4
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 419
  • Primer Pair 5
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 716
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 151
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 0.76
    • Prod. Length: 1311
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 0.98
    • Prod. Length: 115
mcr-2

22 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 282
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 1617
  • Primer Pair 3
    • Specificiy: -1.0
    • Efficacy: -1.0
    • Prod. Length: 378
  • Primer Pair 4
    • Specificiy: 0.01
    • Efficacy: 1.0
    • Prod. Length: 650
  • Primer Pair 5
    • Specificiy: 0.89
    • Efficacy: 1.0
    • Prod. Length: 567
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 102
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 105
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 266
  • Primer Pair 9
    • Specificiy: 0.86
    • Efficacy: 1.0
    • Prod. Length: 816
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 396
  • Primer Pair 11
    • Specificiy: -1.0
    • Efficacy: -1.0
    • Prod. Length: 378
  • Primer Pair 12
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 166
  • Primer Pair 13
    • Specificiy: 1.0
    • Efficacy: 0.5
    • Prod. Length: 87
  • Primer Pair 14
    • Specificiy: 1.0
    • Efficacy: 0.5
    • Prod. Length: 715
  • Primer Pair 15
    • Specificiy: 0.89
    • Efficacy: 1.0
    • Prod. Length: 174
  • Primer Pair 16
    • Specificiy: 1.0
    • Efficacy: 0.5
    • Prod. Length: 92
  • Primer Pair 17
    • Specificiy: 0.86
    • Efficacy: 1.0
    • Prod. Length: 379
  • Primer Pair 18
    • Specificiy: 0.86
    • Efficacy: 1.0
    • Prod. Length: 684
  • Primer Pair 19
    • Specificiy: 0.4
    • Efficacy: 0.0
    • Prod. Length: 1617
  • Primer Pair 20
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 2810
  • Primer Pair 21
    • Specificiy: 1.0
    • Efficacy: 0.5
    • Prod. Length: 567
  • Primer Pair 22
    • Specificiy: 0.35
    • Efficacy: 1.0
    • Prod. Length: 755
mcr-3

19 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 1.0
    • Efficacy: 0.77
    • Prod. Length: 267
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 0.97
    • Prod. Length: 1063
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 0.94
    • Prod. Length: 140
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 0.61
    • Prod. Length: 1500
  • Primer Pair 5
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 737
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 0.84
    • Prod. Length: 169
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 0.81
    • Prod. Length: 296
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 0.55
    • Prod. Length: 144
  • Primer Pair 9
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 676
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 99
  • Primer Pair 11
    • Specificiy: 0.99
    • Efficacy: 0.55
    • Prod. Length: 145
  • Primer Pair 12
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 113
  • Primer Pair 13
    • Specificiy: 0.99
    • Efficacy: 0.97
    • Prod. Length: 814
  • Primer Pair 14
    • Specificiy: 0.97
    • Efficacy: 0.48
    • Prod. Length: 929
  • Primer Pair 15
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 128
  • Primer Pair 16
    • Specificiy: 0.97
    • Efficacy: 0.94
    • Prod. Length: 1449
  • Primer Pair 17
    • Specificiy: 0.93
    • Efficacy: 0.97
    • Prod. Length: 542
  • Primer Pair 18
    • Specificiy: 0.93
    • Efficacy: 0.97
    • Prod. Length: 542
  • Primer Pair 19
    • Specificiy: -1.0
    • Efficacy: -1.0
    • Prod. Length: 814
mcr-4

13 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 669
  • Primer Pair 2
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 3703
  • Primer Pair 3
    • Specificiy: 0.76
    • Efficacy: 1.0
    • Prod. Length: 405
  • Primer Pair 4
    • Specificiy: 0.84
    • Efficacy: 1.0
    • Prod. Length: 487
  • Primer Pair 5
    • Specificiy: 0.83
    • Efficacy: 1.0
    • Prod. Length: 1116
  • Primer Pair 6
    • Specificiy: 0.97
    • Efficacy: 1.0
    • Prod. Length: 129
  • Primer Pair 7
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 112
  • Primer Pair 8
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 667
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 534
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 1062
  • Primer Pair 11
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 1165
  • Primer Pair 12
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 206
  • Primer Pair 13
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 207
mcr-5

13 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.0
    • Efficacy: 0.0
    • Prod. Length: 1042
  • Primer Pair 2
    • Specificiy: 0.87
    • Efficacy: 1.0
    • Prod. Length: 1042
  • Primer Pair 3
    • Specificiy: 0.73
    • Efficacy: 1.0
    • Prod. Length: 1644
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 148
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 635
  • Primer Pair 6
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 126
  • Primer Pair 7
    • Specificiy: 0.97
    • Efficacy: 1.0
    • Prod. Length: 613
  • Primer Pair 8
    • Specificiy: 0.97
    • Efficacy: 1.0
    • Prod. Length: 412
  • Primer Pair 9
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 207
  • Primer Pair 10
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 608
  • Primer Pair 11
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 1251
  • Primer Pair 12
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 271
  • Primer Pair 13
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 271
mcr-6

3 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.67
    • Efficacy: 1.0
    • Prod. Length: 556
  • Primer Pair 2
    • Specificiy: 0.67
    • Efficacy: 1.0
    • Prod. Length: 525
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 259
mcr-7

4 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.5
    • Efficacy: 1.0
    • Prod. Length: 335
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 345
  • Primer Pair 3
    • Specificiy: 0.5
    • Efficacy: 1.0
    • Prod. Length: 892
  • Primer Pair 4
    • Specificiy: 0.11
    • Efficacy: 1.0
    • Prod. Length: 1580
mcr-8

5 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.94
    • Efficacy: 1.0
    • Prod. Length: 158
  • Primer Pair 2
    • Specificiy: 0.94
    • Efficacy: 1.0
    • Prod. Length: 667
  • Primer Pair 3
    • Specificiy: 0.89
    • Efficacy: 1.0
    • Prod. Length: 1375
  • Primer Pair 4
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 712
  • Primer Pair 5
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 514
mcr-9

3 primer pair(s) available

  • Primer Pair 1
    • Specificiy: 0.99
    • Efficacy: 1.0
    • Prod. Length: 573
  • Primer Pair 2
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 131
  • Primer Pair 3
    • Specificiy: 1.0
    • Efficacy: 1.0
    • Prod. Length: 465