Antibiotic Resistance Gene Primers


LCPDb-ARG (Antibiotic Resistance Genes) is a subset of LCPDb - here we present primers extracted from published papers and analysed by our pipeline.
Original article available here

Browse by antibiotic class
Browse all genes
Browse all primer pairs

Primers amplifying vanC-2 gene


Ranking of available primer pair(s) :

#SpecificityEfficacyTaxonomy Efficacy
10.970.711
20.910.51

WPS = Wrong Product Size

BOtG = Binds Outside the Gene

This heatmap shows if given primer pair (#) amplifies investigated gene variants from the pool of taxa in which all variants of particular gene were identified. (green = amplification, red = no amplification)

#1
#2
Enterococcus
Product Length:

439 bp


Forward Primer Name:

vanC-2_F_(1)-281


Forward Primer Sequence (5' - 3'):

CTCCTACGATTCTCTTG


Primer LengthPrimer GC%Primer Melting Temp.
17 bp47.00%44.64°C
Reverse Primer Name:

vanC-2_R_(1)-281


Reverse Primer Sequence (5' - 3'):

CGAGCAAGACCTTTAAG


Primer LengthPrimer GC%Primer Melting Temp.
17 bp47.00%44.64°C
Specificity 97.00%

Efficacy 71.00%
Reference (primer origin)

Dutka-Malen, S et al. “Detection of glycopeptide resistance genotypes and identification to the species level of clinically relevant enterococci by PCR.” Journal of clinical microbiology vol. 33,1 (1995): 24-7. doi:10.1128/jcm.33.1.24-27.1995