Metal Metabolism and Resistance Gene Primers


LCPDb-MET, covering metal metabolism and resistance genes, is a subset of LCPDb - here we present primers extracted from published papers and analysed by our pipeline.
Original article available here


# Gene Name Metal Mechanism Primer Pair Count
1 acn Iron
Efflux 1
2 acr3 Arsenic
Efflux 2
3 acrD Copper
Zinc
Efflux 4
4 actP Copper
Tellurium
Efflux 3
5 aioA Arsenic
Redox 1
6 aioB Arsenic
Redox 6
7 aoxA Arsenic
Redox 1
8 aoxB Arsenic
Redox 3
9 arrA Arsenic
Redox 3
10 arrB Arsenic
Redox 1
11 arsA Arsenic
Efflux 8
12 arsB Antimony
Arsenic
Efflux 22
13 arsC Antimony
Arsenic
Redox 45
14 arsD Arsenic
Efflux 1
15 arsH Chromium
Iron
Arsenic
Redox 2
16 arsM Arsenic
Other 1
17 arsP Arsenic
Efflux 1
18 arxB1 Arsenic
Redox 1
19 arxB2 Arsenic
Redox 1
20 arxC Arsenic
Redox 1
21 cadA Zinc
Cobalt
Cadmium
Efflux 22
22 cadD Cadmium
Efflux 1
23 ceuE Chromium
Efflux 12
24 chrA Chromium
Efflux 15
25 chrB1 Chromium
Efflux 2
26 chrR Chromium
Redox 2
27 cinA Copper
Unknown 2
28 cnrA Cobalt
Cadmium
Nickel
Efflux 4
29 cnrC Cadmium
Nickel
Efflux 1
30 copA Copper
Silver
Efflux 36
31 copB Copper
Silver
Efflux 14
32 copC Copper
Sequestration 3
33 copD Copper
Efflux 2
34 copP Copper
Efflux 1
35 copZ Copper
Efflux 4
36 crdA Copper
Efflux 2
37 ctpD Cobalt
Nickel
Efflux 1
38 cueO Copper
Redox 1
39 cusA Copper
Silver
Efflux 1
40 cusC Copper
Silver
Efflux 1
41 cutC Copper
Efflux 1
42 czcA Zinc
Cobalt
Cadmium
Efflux 6
43 czcB Zinc
Cobalt
Cadmium
Efflux 4
44 czcC Zinc
Cobalt
Cadmium
Efflux 3
45 czcD Zinc
Cobalt
Cadmium
Efflux 9
46 dmeF Cobalt
Nickel
Efflux 2
47 fbpA Gallium
Iron
Aluminium
Efflux 7
48 fbpB Gallium
Iron
Aluminium
Efflux 6
49 fbpC Gallium
Iron
Aluminium
Efflux 2
50 fecE Cobalt
Nickel
Efflux 1
51 fpvA Copper
Manganese
Gallium
Zinc
Cobalt
Cadmium
Nickel
Iron
Efflux 1
52 mco Copper
Cobalt
Redox 4
53 mdrL Chromium
Cobalt
Efflux 1
54 mdtA Copper
Zinc
Efflux 1
55 mdtB Copper
Zinc
Efflux 1
56 merA Mercury
Redox 85
57 merB Mercury
Other 7
58 merC Mercury
Efflux 1
59 merE Mercury
Efflux 2
60 merF Mercury
Efflux 4
61 merP Mercury
Efflux 4
62 merR Mercury
Efflux 6
63 merT Mercury
Efflux 6
64 mntA Manganese
Cadmium
Efflux 2
65 mntH Manganese
Zinc
Cobalt
Cadmium
Iron
Efflux 6
66 modA Molibdenum
Chromium
Efflux 1
67 mrdH Zinc
Cobalt
Cadmium
Nickel
Efflux 1
68 mreA Cadmium
Nickel
Efflux 1
69 nccA Cobalt
Cadmium
Nickel
Efflux 2
70 ncrA Cobalt
Nickel
Efflux 1
71 nfsA Chromium
Redox 4
72 nikC Nickel
Efflux 2
73 nikD Nickel
Efflux 1
74 nirA Nickel
Efflux 2
75 nixA Nickel
Efflux 2
76 nrsD Nickel
Efflux 1
77 pacS Copper
Efflux 1
78 pbrA Zinc
Cadmium
Lead
Efflux 2
79 pbrB Zinc
Cadmium
Lead
Efflux 1
80 pcoA Copper
Redox 4
81 pcoC Copper
Efflux 1
82 pcoD Copper
Efflux 1
83 pcoE Copper
Efflux 1
84 pitA Tellurium
Efflux 1
85 pmrA Iron
Aluminium
Efflux 10
86 rcnA Cobalt
Nickel
Efflux 2
87 silA Silver
Efflux 1
88 silC Silver
Efflux 4
89 silP Silver
Efflux 1
90 smtA Copper
Zinc
Cadmium
Sequestration 3
91 srpC Chromium
Efflux 1
92 tcrB Copper
Efflux 1
93 terB Tellurium
Unknown 3
94 terC Tellurium
Efflux 1
95 terD Tellurium
Unknown 2
96 terZ Tellurium
Unknown 2
97 trgB Tellurium
Efflux 1
98 troC Manganese
Zinc
Iron
Efflux 1
99 yvgW Zinc
Cobalt
Cadmium
Efflux 3
100 ziaA Zinc
Efflux 2
101 zinT Cadmium
Sequestration 2
102 zitB Zinc
Efflux 1
103 zntA Zinc
Cadmium
Lead
Efflux 6
104 zntR Zinc
Cadmium
Efflux 2
105 znuA Zinc
Efflux 3
106 zupT Zinc
Iron
Efflux 1